MCITP is an older certification so MCSE in theory is better as it's newer and focused on the latest technologies. Given this, MCSE would be better for your career.
http://www.microsoft.com/learning/en-us/mcse-certification.aspxhttp://www.microsoft.com/learning/en-us/mcitp-certification.aspx
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Jeff Wharton
MSysDev (C.Sturt), MDbDsgnMgt (C.Sturt), MCT, MCPD, MCSD, MCSA, MCITP, MCDBA
Blog: Mr. Wharty's Ramblings
Twitter: @Mr_Wharty
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