Ok, it looks like mdt 2010 does not detect that CRM is still installing, because i told the apllication installation to reboot when finished.
So it reboots while it still is installing.....
Now this problem of not detecting that it is ready with the installation is also keeping the rollups for CRM from installing, because if CRM outlookclient is not installed the rollup wont install)
So i probaly need to build a script with a wait component in it.