You can retrieve the solution via code. So you can set up a batch process to pull the solution for your nightly backup.
Here's the example from the SDK, you can see more there:
// Retrieve a solution
String solutionUniqueName = "samplesolution";
QueryExpression querySampleSolution = new QueryExpression
{
EntityName = Solution.EntityLogicalName,
ColumnSet = new ColumnSet(new string[] { "publisherid", "installedon", "version", "versionnumber", "friendlyname" }),
Criteria = new FilterExpression()
};
querySampleSolution.Criteria.AddCondition("uniquename", ConditionOperator.Equal, solutionUniqueName);
Solution SampleSolution = (Solution)_serviceProxy.RetrieveMultiple(querySampleSolution).Entities[0];
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